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| Position | Top player | Team ranking | Top prospect | Organizational ranking | Overall ranking |
|---|---|---|---|---|---|
| Catchers | Bobby M Estalella | 5th | 17th | 17th | |
| First Basemen | Mark Grace | 19th | 14th | 23rd | |
| Second Basemen | Delino DeShields | 9th | Mike Metcalfe | 4th | 5th |
| Third Basemen | Robin Ventura | 16th | Fernando Tatis | 9th | 9th |
| Shortstops | Bret Barberie | 14th | 13th | 18th | |
| Left Fielders | Butch Huskey | 21st | 12th | 21st | |
| Center Fielders | 22nd | 15th | 22nd | ||
| Right Fielders | Tony Gwynn | 19th | 12th | 20th | |
| Starting Pitchers | Floyd Youmans | 12th | 18th | 19th | |
| Relievers | Kelvim Escobar | 18th | Will Cunnane | 4th | 10th |
| Closers | Danny Patterson | 16th | Will Cunnane | 5th | 12th |
