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| Position | Top player | Team ranking | Top prospect | Organizational ranking | Overall ranking |
|---|---|---|---|---|---|
| Catchers | Bob Henley | 10th | Bob Henley | 2nd | 3rd |
| First Basemen | J.T. Snow | 17th | Tied for 12th | 21st | |
| Second Basemen | Wil Cordero | 21st | Desi Relaford | 10th | 11th |
| Third Basemen | Tied for 21st | Tied for 14th | 23rd | ||
| Shortstops | Alex S Gonzalez | 20th | Tied for 14th | 23rd | |
| Left Fielders | Ben Grieve | 14th | Frank Catalanotto | 8th | 7th |
| Center Fielders | Jose R Herrera | 14th | Ryan Christenson | 10th | 10th |
| Right Fielders | Tied for 22nd | Tied for 11th | Tied for 22nd | ||
| Starting Pitchers | Kerry Wood | 21st | Kerry Wood | 4th | 6th |
| Relievers | Danny Graves | 12th | 23rd | 19th | |
| Closers | Chan Ho Park | 16th | 23rd | 23rd |
