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| Position | Top player | Team ranking | Top prospect | Organizational ranking | Overall ranking |
|---|---|---|---|---|---|
| Catchers | Bob Henley | 8th | Michael Barrett | 1st | 2nd |
| First Basemen | Greg Colbrunn | 18th | Tied for 9th | 20th | |
| Second Basemen | Wil Cordero | 17th | Desi Relaford | 6th | 9th |
| Third Basemen | 23rd | Tied for 10th | 24th | ||
| Shortstops | Alex S Gonzalez | 19th | Tied for 12th | 23rd | |
| Left Fielders | Shannon Stewart | 15th | Tied for 12th | 18th | |
| Center Fielders | Jose R Herrera | 12th | Ryan Christenson | 7th | 6th |
| Right Fielders | Ben Grieve | 7th | Tied for 11th | 13th | |
| Starting Pitchers | Kerry Wood | 19th | Odalis Perez | 9th | 13th |
| Relievers | Brad Clontz | 13th | Tied for 21st | 20th | |
| Closers | Chan Ho Park | 19th | Tied for 21st | 23rd |
